Scaffold Ga0116147_1001554

Overview

Basic Information

• Taxon OID: 3300009667
• Scaffold ID: Ga0116147_1001554
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHG3_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24975
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: Japan
• Coordinates
  • Lat. (^o): 34.72
  • Long. (^o): 135.27

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002296	Metagenome / Metatranscriptome	573	Y
F023605	Metagenome / Metatranscriptome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116147_10015541	F002296	N/A	FMKNKKHLFHFIVSESMNNNVIDFLLKEFKINTFSKLFETMFRLVNKKIPKMKRIIGNHRSEYAVIDNTDDKRLDKYLRISESDYMQIKRWHYFYNEFGMASTVRDIILFFYNGVVKYGLEEFLKIVGKELRIDKLKNDFLDKMTQLLNIAARKRLLYELIIENYPKYVCST*
Ga0116147_100155412	F023605	N/A	KYLRISEADYLQIKRWHSLYNEFGMASTVRDIILFFYNGVMKYGLEGFLEIVGKKLRIDKLKNDFLDRMTQLLNIAAQKQLLYALVIENYPKYVYLT*