Scaffold Ga0116182_1054674

Overview

Basic Information

• Taxon OID: 3300009666
• Scaffold ID: Ga0116182_1054674
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC077_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2228
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA, Massachusetts, Boston
• Coordinates
  • Lat. (^o): 42.35
  • Long. (^o): -70.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064748	Metagenome / Metatranscriptome	128	Y
F090431	Metagenome / Metatranscriptome	108	N
F092110	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116182_10546742	F092110	N/A	MSCKDYIELKPGMEVKLSYEPWGYKNVDAVIDSVDVEYHYDEAHNRGVFHPVVVCYVGKYRMTFNGPINWETLVIKRCRKVYVKDLKVGDVIERGIHRGFVKSKYDDKAIIWFNIVDTHGYITCYCNVIKDAEVVGHIDLWNL*
Ga0116182_10546744	F090431	N/A	MINMRYIYSNRNLICVDNISLMEIFQDEIVLTLDSGRKLGVFSTKKSDDLEYVFNELSEEIRSGNYNIDMIGFRLLMKNYHGIKEGTWFL*
Ga0116182_10546746	F064748	AGG	MYRFIGNMEDVTPCKSMNEGCIIAGCKGKVWGQCHFDPNLNLLSSGSEYYEEVRDTVFRVEKDNLFSSGGLNPLFDNKGKIWMKASHLKKHFEQSIGYNHETKQSIPLYKEYPYDAEVVEYALVEVKRTPVRKFVEGGK*