Scaffold Ga0116182_1030316

Overview

Basic Information

• Taxon OID: 3300009666
• Scaffold ID: Ga0116182_1030316
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC077_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3366
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA, Massachusetts, Boston
• Coordinates
  • Lat. (^o): 42.35
  • Long. (^o): -70.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003622	Metagenome / Metatranscriptome	476	Y
F028664	Metagenome	191	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116182_10303162	F028664	N/A	MILIGGKALQNLGSCRHTNDVDFLINDKSTTKAFITGEHVDYLNANGNKFFAEIFEIEQNNEQATPNSLFELKAYAFVQHCQNFNFKKADDCEYDLKFLVRNFGITASKIAKKYMTSGEYSEIEKIIKSVKF*
Ga0116182_10303165	F003622	N/A	MRAYKQELEIIANDILNQNADAKGNENKPNYTNREFMNALIIFQTALMDKMWDNQNFDKMEMQDRENMAVQCGLDLRKLIHTYTGLDTHKIEEFL*