Scaffold Ga0116135_1007478

Overview

Basic Information

• Taxon OID: 3300009665
• Scaffold ID: Ga0116135_1007478
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4067
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): .1 to .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000208	Metagenome / Metatranscriptome	1593	Y
F001742	Metagenome / Metatranscriptome	643	Y
F002560	Metagenome / Metatranscriptome	548	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116135_10074781	F001742	AGGAG	MPDATPGNRERNRQKVPRIGREEAARVFAQCEQLLDGSTLFVENLRQMGFARFLAPLNEQVLELAVQPDAWGERTRARLISYVFAGLRGSPVESAPVEEILQVSNVVVPCFLLELGRRRRHIGIEFPDNPCDSGARFEFRVGPSRPVHSINRQHFVRLVAEAGEELVGLCYFGDQQSRECIESRLTPGPTSNS*
Ga0116135_10074786	F002560	AGGAGG	MIENSPPGPPDLARSLVIPSPVALYVSGELIFELYDGGQPCRRFSILWERFVPGKDNEPETAAQSSPTGSRTHQD*
Ga0116135_10074787	F000208	GAG	MAMRIRVTTRADLFEERKQQHIARGYRIEDERPIPVNGFCSFIAVSEISDSDGISDFVARALNGVA