Scaffold Ga0116146_1167152

Overview

Basic Information

• Taxon OID: 3300009664
• Scaffold ID: Ga0116146_1167152
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHG2_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 882
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: Japan
• Coordinates
  • Lat. (^o): 34.72
  • Long. (^o): 135.27

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025938	Metagenome / Metatranscriptome	199	Y
F058560	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116146_11671522	F025938	AGGAG	MVVIPDKIVDLLSAMFEDVRDKQFIIGDTLIEIVNATGDKGGTIAYLAGKLGVSASTLYDYYRIAKLWTPEYRAMYQALDWTIYRNADPNDPEDRALLDRCIDEQWSSATFKENKYPALKDPRVIVGRMIALGKRIYEQDTLEIEQREAILLAIRILQEIVHALENPEYLDVKF*
Ga0116146_11671523	F058560	N/A	ERRIMGKSDVRCPKCGKATNGVELIYPRTNEQEERRIKAFMCENCLYVFSESDVENNNYSFQNEK*