Scaffold Ga0105854_1017537

Overview

Basic Information

• Taxon OID: 3300009660
• Scaffold ID: Ga0105854_1017537
• Source Dataset Name: Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-058
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2374
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil → Permafrost Soil Microbial Communities From The Arctic, To Analyse Light Accelerated Degradation Of Dissolved Organic Matter (Dom)

Source Dataset Sampling Location

• Location Name: Arctic
• Coordinates
  • Lat. (^o): 68.6137
  • Long. (^o): -149.3144
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016064	Metagenome / Metatranscriptome	250	Y
F016418	Metagenome / Metatranscriptome	247	Y
F029574	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105854_10175374	F029574	N/A	MGRQSGCDAGGIMERTARYIVRLQKDGQYMVVMSRPEWANREIPGFATEAEAKAWIAGRRQQSKL*
Ga0105854_10175375	F016418	GGAGG	MTYRGYELEQKTLMVGWQITITKDGKFVRNGSVVQQLTAAMDEAQKFVDGVIAESDIAVGAANS*
Ga0105854_10175376	F016064	GAG	MLFWHMPISSIRRETFEYRGYSLQITYATPQWQVLIDAVLGARPAIPPDKQIVRGWDEGETLKRAKTRIDLLIERPSLN*