Scaffold Ga0123328_1048111

Overview

Basic Information

• Taxon OID: 3300009659
• Scaffold ID: Ga0123328_1048111
• Source Dataset Name: Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1_A C12 SIP DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2025
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella → Smithella sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor → Anaerobic Biogas Reactor Microbial Communites From Washington, Usa

Source Dataset Sampling Location

• Location Name: Washington, USA
• Coordinates
  • Lat. (^o): 47.6525
  • Long. (^o): -122.3049

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058179	Metagenome / Metatranscriptome	135	Y
F072820	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0123328_10481111	F072820	GGAGG	MKPLHQVIEDAVIIRGIIDYLEKSVEPVSLHELAMTQHISNSTALRLCRILDKAAIIEHPTVTRIVMGASQEVPQLAWQLTKSF
Ga0123328_10481113	F058179	GGA	MTGTEIVALVAWYAFIAVCILAFYLLADAATLSMTGSCAGQGFSNITIEADILMASINQTANGTTWQIWGAPA*