Scaffold Ga0123328_1034830

Overview

Basic Information

• Taxon OID: 3300009659
• Scaffold ID: Ga0123328_1034830
• Source Dataset Name: Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1_A C12 SIP DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2573
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor → Anaerobic Biogas Reactor Microbial Communites From Washington, Usa

Source Dataset Sampling Location

• Location Name: Washington, USA
• Coordinates
  • Lat. (^o): 47.6525
  • Long. (^o): -122.3049

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034940	Metagenome / Metatranscriptome	173	Y
F043951	Metagenome / Metatranscriptome	155	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0123328_10348301	F034940	N/A	YYRAQYAGMTKVCMRQSIVECGRIRRFGLCPKPPDSEAWRRCGFAIGQHEIPLMVEE*
Ga0123328_10348302	F043951	AGGAG	MEHLSLGRPIEASLGPRYQCPVCGLKLWTIQAPWTGWQEWYRTEDGRRHYKHSCNIMRDALVMFRWMFGQDW*