Scaffold Ga0116132_1063496

Overview

Basic Information

• Taxon OID: 3300009646
• Scaffold ID: Ga0116132_1063496
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_150
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1166
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum → Paludibaculum fermentans (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): 1.5 to 1.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F093144	Metagenome / Metatranscriptome	106	Y
F104279	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116132_10634962	F104279	AGGAG	MKPLFDAVVLTVMLNMAKAINLYHLGGVIGLSLGAAELVTAFSANSLKRRANQP*
Ga0116132_10634963	F093144	AGGAG	MTKKSISITSAMLITLSLPLAQAAVKMAGTITVADFAKETLAKKTLKQVQASAAVVADEADRLRMIANSKSSPDSHLDKLTALKVEVNRMGQEISSLEAERESLAPWEQQAVDEVLPLLQATAANTEGAIEYVSENRNRLWTEAYRDYADRVWEDSAQIAKTLKDYLKYEKLRDQEVQVEERIWADSDRNAE*