Scaffold Ga0116121_1036943

Overview

Basic Information

• Taxon OID: 3300009644
• Scaffold ID: Ga0116121_1036943
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1543
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → Cupriavidus basilensis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): .1 to .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042700	Metagenome	157	N
F071899	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116121_10369431	F071899	N/A	TPRIIARLIVGKPVTVNLPAGTSSLSLVTEGKFHEFLRAFHAPEEFEPETSRTEVIGLFDLIFGRH*
Ga0116121_10369434	F042700	N/A	MDAQKEAYKLLKEHGEQIRHNKHEAWRVNGHLITITKTRTDDRGWLNKLCEIRRCLKMPAEESFRHARCNGKGLFTDAPVAQHSVSCAGPAATR*