Scaffold Ga0116126_1009233

Overview

Basic Information

• Taxon OID: 3300009640
• Scaffold ID: Ga0116126_1009233
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4775
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): .4 to .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001596	Metagenome / Metatranscriptome	666	Y
F006278	Metagenome / Metatranscriptome	377	Y
F017965	Metagenome / Metatranscriptome	237	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116126_10092334	F017965	AGGA	MSEKIGHRDALYLFACHLEWRTKRNVAAYQELLAALDDHDGDIRRLAESLLHRSSPRPERTAIGIESW*
Ga0116126_10092336	F006278	GAGG	MFRAEIQWLASGPTLKLEGSLVADWTEQARCLVTKDVLPKGLIVDLTDVSYIDSVGEQLLKWLASVGALFVAGSVYAIAVCDRLRLSPMKLAERRKRRHGNSGKRSSIKHSHPVEAI*
Ga0116126_10092337	F001596	AGGAG	MSWFHSSTAAVDPRNYASPAEIVVCFQDQRNALGRLAFLITGDQATAEQAVVQACEMTLQGNSPFRDWLFEWTKAATIASAISHGTEAIRICEAAYKDRRCPHVEHLSQGDAEERAASLDLILGTDAQTLIADLDPLCRAVLVLRAAIRSSIQDCALRLNVSRAAVLGANCHAMTWLHDGHVKPVEENHEASHAV*