Scaffold Ga0116118_1077452

Overview

Basic Information

• Taxon OID: 3300009637
• Scaffold ID: Ga0116118_1077452
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1140
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): .4 to .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016632	Metagenome / Metatranscriptome	245	Y
F025427	Metagenome / Metatranscriptome	201	Y
F027079	Metagenome / Metatranscriptome	195	Y
F047437	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116118_10774521	F047437	N/A	QEFKTLYNEVAKKLQEYSHESDDPIDTLKAKLPAFCAIERLAHPDPVVPQNKIGLTLGVMLAGVLGSIGIGVLIGLGTGMAHWIAHLFT*
Ga0116118_10774522	F016632	AGGAGG	VTGILELFALVELGSGVGFLAGWRNKVLKAKVNFFRQPNNKPSPFDKVLRSKVGRAVTREDHLRLQLADGLVQLIRKVVQYEAFRQVVRGLALAHSPMRRALRKKGGRPW*
Ga0116118_10774523	F027079	AGGAGG	VIKTFLNLCLIFFLNTLAYLVALIAAVAVAWAAVCGARWICAALQNAVMSLRARQRKKEMCAHATR*
Ga0116118_10774524	F025427	N/A	MEELLVGLETCPIQKKGLVWRLLKLYWKKLLFIALMLVLPGGLIVLLLCVTAWALNWEQEMTAYMDATYKKWKEEHDVHSE*