Scaffold Ga0116102_1010087

Overview

Basic Information

• Taxon OID: 3300009632
• Scaffold ID: Ga0116102_1010087
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3469
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): .4 to .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F005112	Metagenome / Metatranscriptome	411	Y
F039911	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116102_10100872	F005112	AGGAG	MSLVAKYKLFWAACIATLCGLAFWKNSKSYPGKSRLWRLGKSTIGTGLVLLMVLYAPALLLMYVVIWLTSPFKNKIMQSTAAFASILAVSHLAGVVFEAVALLGVFAVDLLSGQVVARMDKRERNKLAKAA*
Ga0116102_10100873	F039911	AGGA	MKYTIAALLAVVVAIAGYFGIRHLTRKDFGFTPLRRCATKLANTLTHTEATAAQEAGVSPAA*
Ga0116102_10100875	F002761	AGGAGG	MTFTPSATSSFSAGAVFWGMVWATLGKLNELAHFVGFKKSNPRQTVLRWINAHKVVTITLTEAVNYSVHGISSPLGVTFALGGTLVNIFMVTFIVPIWCRLSRLESRL*