Scaffold Ga0116125_1000968

Overview

Basic Information

• Taxon OID: 3300009628
• Scaffold ID: Ga0116125_1000968
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12962
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (61.11%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): .1 to .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000272	Metagenome / Metatranscriptome	1408	Y
F004586	Metagenome / Metatranscriptome	432	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116125_10009685	F000272	AGGAG	MSQTVVEETAGHIADSARRASCATNAVADAINDGAGVVKRAAKQGGDAAEELLNDTTERLQRNPLLTVAATFAVGIAAGALMGWMMKRT*
Ga0116125_10009686	F004586	AGGAG	MTTNEQVKCAHLPCLCLAQAGDKYCGQSCKDAGSNEVEIACECDHGPCPLTV*