Scaffold Ga0116105_1000363

Overview

Basic Information

• Taxon OID: 3300009624
• Scaffold ID: Ga0116105_1000363
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12323
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (64.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): .1 to .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005311	Metagenome / Metatranscriptome	405	Y
F005887	Metagenome / Metatranscriptome	387	Y
F008092	Metagenome / Metatranscriptome	339	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116105_10003632	F005311	GGAGG	MGGGICGDALVRAANAMLAALGGDQVSLLLPGTALASDAAGQLGLVDPGVQNVIVTPVATRNLPTENQGPTRRIEFTLPASAIEVQLPTLGMASAEELFAAALGLVYDGDLFHIETVVTENFAGTAYFYVLTAVE*
Ga0116105_10003636	F005887	AGGAG	MASERELALRTIDFEFQREVLDKLVRLETKMDSLIGNGQPGRMKIVEDKVAMLEKNDMRNTLHNRLVNGMISAGISIAIALHKYWAK*
Ga0116105_10003637	F008092	AGGAG	MSTVPSTTIVTNLKNVTPPTANTLADATAGGTDMPGMLALALAKAYELKQCLTLIVGKTDSADPNLTTLNDVLASLT*