Scaffold Ga0114912_1032318

Overview

Basic Information

• Taxon OID: 3300009620
• Scaffold ID: Ga0114912_1032318
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_51
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1404
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.47
  • Long. (^o): 11.53
  • Depth (m): 3514

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022285	Metagenome	215	Y
F034719	Metagenome	174	Y
F074970	Metagenome	119	N
F104033	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114912_10323182	F034719	AGGA	MRRQSDKVWDYDAIDKQRNEDWNGIHKLVTDHAVEKRVTADEIAKRNSIFYNHREINKP*
Ga0114912_10323184	F074970	AGGAG	MPEEFEHELIGVLQEHYGKNFDYNWDSEEDGFYIRLRVWKEKEVD*
Ga0114912_10323186	F104033	AGGAG	MIVFNDSYKSEGFEVAIEKVNELLVDLGLKLGYYFKEDFASDDGEYAYTLTIERHEESKDDKQMDLL*
Ga0114912_10323188	F022285	AGGAG	MKKIKQPETMVKWGNKDVTILELFEKLDEFVCDPVRSMHEMDGDMYMSDYQKLSQAHWRIVHTLRE