Scaffold Ga0105236_1009262

Overview

Basic Information

• Taxon OID: 3300009619
• Scaffold ID: Ga0105236_1009262
• Source Dataset Name: Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3827_250
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1033
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED10 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates
  • Lat. (^o): 9.7046
  • Long. (^o): -55.3027

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011853	Metagenome	286	Y
F021104	Metagenome	220	N
F042929	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105236_10092621	F021104	N/A	DWEDACEVDDKIRHGLKNTTAELFLHKSAKPLRDINFLEPKKQASLFGETFDEEFTDECEGLCGV*
Ga0105236_10092622	F011853	AGGAGG	MKPEDIKKKKEMLIKQHNTLKDKIDEGKNAIVNMQAQLNGLVGAVQLCDDFLNNPEEPKKDK*
Ga0105236_10092623	F042929	GAG	MMGVWDPGVEKTVLSQIKKAIGARYQGLKGMTRVIVPGILIVFYFFIFFLLLSGCAYFKKEKEDEIIITDLPPIEFICKKIDCGDEDIDKLVADEKNTIACIKLQPECNSDLEN*