Scaffold Ga0116127_1006223

Overview

Basic Information

• Taxon OID: 3300009618
• Scaffold ID: Ga0116127_1006223
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4781
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): 1 to 1.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035367	Metagenome	172	Y
F045645	Metagenome	152	N
F051827	Metagenome	143	N
F063278	Metagenome	129	N
F063304	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116127_10062232	F051827	GAG	VKSQVYLVQNCGGVSLEVVAGPFDSEAAAAIEEAIIQRVKADPGLRHGGDDTLHTLEVAPDRQPEFSGFSGGYMENIRWVAAGCPPQGKPDTWDQADFALATQEKCE*
Ga0116127_10062235	F045645	N/A	MGQDLHKCGTEDLDMKLQETTLTALKSVAGVYAVRPIIRGKALALRQGRDGPELAQDEGQAVRVVAVSDAKPSLLSFAAINGIPVKNYTDMAVPKPKAPSAPKPAEVPELVM*
Ga0116127_10062236	F063278	N/A	MKERYLIIGFQPPTRRISLDSERAESATDAMRAVAGMRKAADVLLAWTAGQMRQMADLLTAMTPQQIAFNRRSAELEERAFRAGQTAPPPVRTAGPQRQPFLVISYNPHTEAVHLDTELSDSPDAALRSVAGIRGRAHVILAFTPEQLREMAANLEGLTAEQMARNRRAAEQEEKTFYAELTARQ*
Ga0116127_10062237	F063304	N/A	MRLNNSAPDRDVSPHVYNLLDQRLAQQGAPLHQLIRTYAAAVPAQPASPEELLNQLTAVLGKWAADPAQRVKPETVLAEEHLRLMDDISKIQGPEGASRLEATLVRVVANQFARNMGSALRIPDESKLICLSDVKPANAYSAFAQRTALIGIQPHEWVKRWVTSQRDLFRNKPSDAGYLRLAQRLSGAWPLEPGKDAFQRALGSFLDGIAASTNQSHAVVVQSSLLETFARAIRHQARDLGLDRPAVPPPAMSIC*
Ga0116127_10062238	F035367	GGA	MPAAAKWMFILVLNAVLCGFFGLGIAVVHFLWLEYATVRWPKVRYTDDYQTSFALACAAVVFALTTLRQIKTRLESKSLRPGEIGFILIFAAIVMVGMTPVPGSNFPQYLYEMNYSGKKDTSKEEPKSEEEAKPLKLKRDCP*