Scaffold Ga0116111_1000326

Overview

Basic Information

• Taxon OID: 3300009616
• Scaffold ID: Ga0116111_1000326
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39953
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (64.29%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): 1 to 1.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038119	Metagenome / Metatranscriptome	166	Y
F047999	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116111_100032626	F038119	AGGAGG	MRHSIRTTLCISLLLATLAACGKKAPSSSSTAETPNDGVSSVPPAAERATDLSPVDLPLAGAVKEVKAKVLDKEADDKTKGLVRIKVLEMNGPVEVSENTRWEVWKPGADPEEQKPEITAWASNEEAVAPGTWDLRLHYEDGSICKAEGWIRNVVINAGKLWKAEAVIAAPMQYVRVFATLDGKDAADNAHIDVFKAGTDQAEFPPLTSFWSTQKQALAAGNYDLRITYDKNNIKAKAAVKGFAVGGDHGVQKKTIALVK*
Ga0116111_10003264	F047999	AGG	MNNRETGLSLDLAKNAKSEWIASMGLPSENATGLVVMDVAVNGTSVKFVAVELRMAPFDLTLGSDGRMKGTISSPQGSLPVEFKRTGEAKVELIPASPAVSKELEGDWEGSIESPNGAFRLVFHFKNQPDNTVAATVDSSLAASMVGMPLDNVKQTGQKVEFGMKIAGGTFQGSLNKEGTELAGQLIHEANSTPLTLRKR*