Scaffold Ga0116104_1004658

Overview

Basic Information

• Taxon OID: 3300009614
• Scaffold ID: Ga0116104_1004658
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_150
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5271
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): 1.5 to 1.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015428	Metagenome	254	Y
F093116	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116104_10046585	F015428	AGGAGG	LTGILELFALLEVGSGIGFLVRWRSRLLARKVNYFRPPHNRKSPFDKLVRAQTGPVTTRQDQLCLKLADGLTVLVRRLVMFDAFRQLMRALALPNSPLRRRLRGQRRLS*
Ga0116104_10046589	F093116	N/A	FDDSVLALLDPEIVKHWKTLPEYPWGVATPTEVKVIDDGDALFDRHPKVAPYDHDYVTCMLYDAKRGQTGIGYVVNAITWFNLLWLNRESILAELRAMQPSPQVAAAIRWMEQELPKSRMPMVASRLEEIIDAIKLNGSSIEWASGVIMEFRETCPVAPNFWWQGGYQGQGRIPRDRLENGNEPIPVTTAMDVAREQWIELFQKARRFADKESWKRCWRVPPEIRSFPTRPEAATAARDFWMFYNRTREAEKAEFLKAGKDHRGKKVTREQEAGIAAYLYAEEEVHNRIKASGMYLEIYAELVKLVFDRGMTLEPPRNPDGTVKPVADGILGGPHTLDGLLDIARAAGVTRCHVPLTWESDRVRADYGELNLDIVVEDTLVRMAGSAPNPASWIGIVDLPDGEYRLEHGLVVTEDTSEAPPQEPAVALVAVNGFEQRLKDEKLQQEDRQRIEAELKAFRAQVCNGVTIKPVTYRNPQSQEDEAGAEVFLEGTSEPLGWISREHLPLVTSELTGVLVSGGPYTLKVLCPLPEPGAHS*