Scaffold Ga0105347_1052796

Overview

Basic Information

• Taxon OID: 3300009609
• Scaffold ID: Ga0105347_1052796
• Source Dataset Name: Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1462
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosomonas → Nitrosomonas communis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9223
  • Long. (^o): -106.9517
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017105	Metagenome / Metatranscriptome	242	Y
F029804	Metagenome / Metatranscriptome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105347_10527961	F017105	N/A	IAALAGVACGARHFFIFLNEKSKNRLTEKKLEVWEGEGGAVPVAATRTAAQVRPKKPRAASSPGVG*
Ga0105347_10527962	F029804	GAG	MQFARVYYSPKGSSTQVEAGDLFFARGKPLLVVTWRRKDGDRVPDECIELDPGKLQSASSNGTVFRYEGEVRA*