Scaffold Ga0105347_1007125

Overview

Basic Information

• Taxon OID: 3300009609
• Scaffold ID: Ga0105347_1007125
• Source Dataset Name: Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3943
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9223
  • Long. (^o): -106.9517
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020236	Metagenome / Metatranscriptome	225	Y
F055178	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105347_10071252	F020236	AGGAGG	MKKMVGFIGLAFLHLMVACSSMAPTETRQPTAVTDFKSVAGKWEGPLIREHYFTQNYDRVTLVIDDKGAYDIAVMRTRTTAQGVSVSYSTIGVFAEKGKLVLTDGKLSAKGEKGGQATLQLYVDPGSSERLLKSDAKDSEGFTYTAELKRTGDSASAK*
Ga0105347_10071255	F055178	GAGG	VETHSSSERPRWLFSRRADFWLASGGASLGLLAAALVILWHGDWELSWLDFVLAELHLGATYGAIIRRRIWRRRPVDVLIVPLVILALTYALTMTDQMILLTSIAMYAAVWHRGRQSLGVACFYQGGMGGP