Basic Information | |
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Taxon OID | 3300009606 Open in IMG/M |
Scaffold ID | Ga0115102_10185625 Open in IMG/M |
Source Dataset Name | Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_5May14_M2_3um Metatranscriptome (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 889 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Cryptophyceae | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 36.6953 | Long. (o) | -122.3565 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F020015 | Metagenome / Metatranscriptome | 226 | N |
Protein ID | Family | RBS | Sequence |
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Ga0115102_101856251 | F020015 | GGAG | MAAMESAPTSRRAFYAKCALMATIATAVVVGSVLVMADKHEASAPMANELGGAYYAVTKPPAFNFNRFISNAWFYSGRSSDGNEEGFLEKLARRHHYKLQIHHLETFKDNEFRAALFSENIHCIVFPPLTHFPGISELAKKDLRGYVSAGNNVVFVGSYEWLSVMNDVFGFQLMSDYKDGPYYRNDRTVKGTPFQWSMSRLEQPDGAIYSVKVDSIPMDGSCMFDTMGACVVFYVKYNLGTVVYIAFDYDTPYGIGHWGQILHAAMMM* |
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