Basic Information | |
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Taxon OID | 3300009604 Open in IMG/M |
Scaffold ID | Ga0114901_1031081 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s16 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1977 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → environmental samples → uncultured marine virus | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
Source Dataset Sampling Location | ||||||||
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Location Name | Mediterranean Sea | |||||||
Coordinates | Lat. (o) | 39.48 | Long. (o) | 7.24 | Alt. (m) | Depth (m) | 2766 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F003677 | Metagenome / Metatranscriptome | 474 | Y |
F003834 | Metagenome / Metatranscriptome | 466 | N |
F026154 | Metagenome / Metatranscriptome | 199 | Y |
F090327 | Metagenome / Metatranscriptome | 108 | N |
Protein ID | Family | RBS | Sequence |
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Ga0114901_10310812 | F003677 | AGG | MVDQALYFFEKDVGKKVYEMEYEITYVTKWQILAEDKDQAFKIWLENHKVDIATEDGKDVVCSYVKDYTQIGSTKEIAKIKLDIDNDEVIADES* |
Ga0114901_10310813 | F003834 | AGGA | MSSSKTPIRQDEKDYLDHFIETKYDDRKNVLKTEMQDTIDKEAEDNFEAFKDKLKISKMHDEVRTLYEDHKKFANEMDSILLEKKGKLDNAINVLEDKLDQWKKIRKWKNDIERSLIKEPDELDRLLKKLCHEETERDYYSGPRGKAIQMLDMSKEYCKNLLNAGQSLSTVWGVLDQEMGKEKINTNTIPKPEFLAITK* |
Ga0114901_10310816 | F026154 | AGGA | MNGIVNIVRFVAYSVGGLAVRKAWNWLIEDVDPIPGSKEFDDEYYQTKTKYIRLTKLKEEHEAYRKNRRSDS* |
Ga0114901_10310817 | F090327 | N/A | VNQPFAIFDEWMKTIDPYEDESPYPLRISQIIKAWEKIDNVGKLNYLSRQTNPRYKEIMKGN* |
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