Scaffold Ga0114911_1130623

Overview

Basic Information

• Taxon OID: 3300009603
• Scaffold ID: Ga0114911_1130623
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_904
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 714
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.49
  • Long. (^o): 7.9
  • Depth (m): 2455

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058518	Metagenome	135	Y
F096197	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114911_11306231	F096197	N/A	ISKEKEFVMTNFTKEQLKVLRNEINSLLLTHDFEETCDLKIQTLVDSCTYRGGEATFKVKVLLDGAETKEEKDLKKMAILSRLDTSKVHDYHDHRSVRYRMQLVGYKTKAKKMPWIVEDRLSGKEYKLTDTQARQWFEYEVQS*
Ga0114911_11306232	F058518	GAGG	MRFKDITIEAEDIECDETDTIHKAIKNHILDVGIATHKTLTGFNWRLDVKMRMDNDDT*