Scaffold Ga0114911_1033453

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114911_1033453

Scaffold Ga0114911_1033453

Overview

Basic Information
Taxon OID	3300009603 Open in IMG/M
Scaffold ID	Ga0114911_1033453 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_904
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1658
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
unclassified Hyphomonas → Hyphomonas sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	43.49	Long. (^o)	7.9	Alt. (m)		Depth (m)	2455
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002445	Metagenome	558	Y
F025008	Metagenome	203	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114911_10334534	F002445	N/A	MSTDKKICPECKGNGYLRTEMNTIVQCLNCWSEGEIDEKIWARDYTPIIPDELQSTQKDD
Ga0114911_10334536	F025008	AGGA	MIKYILIMKICSAVHGDCLPDYNAGTFDTWFDCAANGTINTGSAMAEMGPDLVNSNKIYVTFKCKQANET*

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