Scaffold Ga0114911_1012488

Overview

Basic Information

• Taxon OID: 3300009603
• Scaffold ID: Ga0114911_1012488
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_904
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3008
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.49
  • Long. (^o): 7.9
  • Depth (m): 2455

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004419	Metagenome	439	Y
F046641	Metagenome	151	N
F073413	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114911_10124882	F073413	AGGAGG	MGRKPGPTKWTKVFRITPDDDRKLEEILEFWQRSKGFYNMKTYTRSDVIGQAVRQYWLQQKAKVETDGKHCGICGNPTNRQD*
Ga0114911_10124884	F004419	AGGAG	MAFYRTREGALTAADSFTALGSLFGQSTTAAIQIPQQASQIVGIIATVASDSATNGATTFAVQLSGDGLSQGQETMTIGSQGVDGTPASNGMTNLPLSLDVAIPVVGSNQVSVAAAMDTDVGTCAVAVTLVFA*
Ga0114911_10124886	F046641	GAGG	MKALTKTQVKKKLKTMVTTTKSLLDDKMSNPRSYVTMSPKDLLALNGKFMTKLKSISK*