Scaffold Ga0114900_1059888

Overview

Basic Information

• Taxon OID: 3300009602
• Scaffold ID: Ga0114900_1059888
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_231
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1136
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.48
  • Long. (^o): 10.16
  • Depth (m): 2304

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004908	Metagenome / Metatranscriptome	419	Y
F011291	Metagenome / Metatranscriptome	292	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114900_10598881	F004908	N/A	DGTINPKTGLMEKPSWYVRFEDMSDRVLFKSRLLELLSMGFRKTVENFKAGKATTTQGGEARFWVVVFQDYEVRLQTKAQIMEVVTEGHKHRDDEDNAKFERNGNGTKEEQYTLE*
Ga0114900_10598883	F011291	GGA	MDKYEINVWKDAELLSKEQVSFATQEECHDYVVEKYEAPGTWTGAHQNKHGVLITRPPVGIRVTWARLGKNYYKPKKLSAEEKKMQRELYDSITPEVAKDIGHGEMVAKVRKDYYGHPNAKGWKEIR*