Scaffold Ga0114914_1015428

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114914_1015428

Scaffold Ga0114914_1015428

Overview

Basic Information
Taxon OID	3300009601 Open in IMG/M
Scaffold ID	Ga0114914_1015428 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_38
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1388
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Orkney Island (southeast)
Coordinates	Lat. (^o)	-61.27	Long. (^o)	-43.92	Alt. (m)		Depth (m)	4
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F043081	Metagenome	157	N
F068130	Metagenome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114914_10154281	F068130	N/A	MKHISTQQLSALIGYLKAQPWEQVHPLITMLSSLPAVEPKKDTT
Ga0114914_10154283	F043081	N/A	MISTKEDRGSLDLTLLLEQANLKIDELKDVIDGHKSWHDSDKQQIYDLKMALGKLQNLEVVNEQYKILIAELKKDNKILAKQFDDQLKQFRNKGGL*

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