Scaffold Ga0105214_100733

Overview

Basic Information

• Taxon OID: 3300009595
• Scaffold ID: Ga0105214_100733
• Source Dataset Name: Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3635_2500
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1356
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates
  • Lat. (^o): 1.4995
  • Long. (^o): -36.9978

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024128	Metagenome	207	Y
F027651	Metagenome / Metatranscriptome	194	Y
F054947	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105214_1007331	F027651	N/A	MNRSKTIKNLVSKKLNWEAIGLSNSINKNYHNWLQCVTDKKDYVIESDKFGHGFGVFSGPKYFRISLVSGNSIIDQKNSKLYKTVHKDNHVWGYVVKADSENHKRGDILTKNYKVVGNVLSGNRANLGMPNSHYPNYTETWAGAECW*
Ga0105214_1007333	F024128	GGAG	MNINCTHLNEKPKNYNERGNASLSDNLKYINDAVSHVEINRFQGAGSIIYCVVAKALTINVVTGKKAFVVWAVQEHEDFETAVQYAKDELRNRIVMGAPVLKHASPDEDVKNLVEY*
Ga0105214_1007334	F054947	N/A	MVSKNKIGKIFRDFNNEVLKELIPNDMVVPKLRMQFSMQNLSWLCRNLQIKNRHHPEIKQTMAKLNTL