Scaffold Ga0115011_10055794

Overview

Basic Information

• Taxon OID: 3300009593
• Scaffold ID: Ga0115011_10055794
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2705
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 15.249
  • Long. (^o): -20.515
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013777	Metagenome	268	Y
F033839	Metagenome	176	N
F043451	Metagenome	156	N
F077401	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115011_100557942	F043451	N/A	MTTIQPWIYPPNSSVDRVTYTPTLSAHILEYQEEMIDAKGNVYWKTVDSTTFGGSTSVKEFLEQMKDFYEKKSCRLDKML*
Ga0115011_100557944	F033839	N/A	MNNLSPITRALLTVGIGVIIGIIPVLMIINTLSTTAIKFCGRYGSDYTIVDLDTPFGTIKRCVAKN*
Ga0115011_100557945	F077401	N/A	MTMKTYWAWKHAINNTDKDKSDFTKILARDMNSAMNKAQKHYKHHMFNSNFNVSVMSGETDDRGYAKECEYSTGQWTRKAWSAYNYFHSLAPDMQERVYNHYRNLDAHWNDKSKAELQTIVGELSCTRN*
Ga0115011_100557946	F013777	N/A	LVGVLPEGIHLANEPGNKESRNIYFSLKRGGGLTMWGPTSIDHFKNLHDHYLKKNLIVHAYATPYHNDHADLVKNPAAMWSFVMHEKRDLERMAFKSYIHPQGDFSNGYYDICDIEKGTFDCDNMNSGEVYPVILYAHHETMLTVGCVVKTSDYPDVVTGEEQLALWIYYPSAENIEPFDTASGHIYKD*