Scaffold Ga0115011

Basic Information
Taxon OID	3300009593 Open in IMG/M
Scaffold ID	Ga0115011_10041575 Open in IMG/M
Source Dataset Name	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009593 Open in IMG/M

Scaffold ID

Ga0115011_10041575 Open in IMG/M

Source Dataset Name

Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3124
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (50.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

3124

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (50.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Tropical Atlantic Ocean
Coordinates	Lat. (^o)	15.249	Long. (^o)	-20.515	Alt. (m)	Depth (m)	55
Location on Map

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Source Dataset Sampling Location

Location Name

Tropical Atlantic Ocean

Coordinates

Lat. (^o)

15.249

Long. (^o)

-20.515

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006892	Metagenome	362	Y
F015659	Metagenome	253	Y
F020445	Metagenome / Metatranscriptome	224	N
F058519	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115011_100415753	F020445	AGGA	MSDYDNTAALWKRQPRDTDVAGKKYPHYNGSITVGGKKMNLAAWLNTEKTKDGQPDISLKISEIVAKEEQPF*
Ga0115011_100415754	F015659	AGG	MKNGLAEAIKKFRDSIDDKDYANLGAKGKYLTVPYRLKFVRDFFGERMSIQTESTELSNGSHKFKANIYIDDKLVSVGESKQMKNADKEFEKQQTVSIGRGLSILGFFGDELATAEEMEQFLKPQKPNVVSIKPTAKPKVSTKELADEWIAIMKKVADNKELKSIGIFEQNLNPLRKEYLSDLKQINSDLIQQARIDKEEVSLHKQINKRKDNNE*
Ga0115011_100415756	F006892	N/A	MSDMGIIKPLRNRVRDLEVINESHQKKNGQLRVEIQEKDKKIKELIEQINNPLKKMRGDGDL*
Ga0115011_100415757	F058519	N/A	MANHLKIIGEAYEKFKDTNTSVSANKEPHSLRAMKRYFLTKEQAKKCSNASLKAGTIGHNIVEICLNKNLTVDEVFASEEIQKEIDAYFPIDKTDEMKFKFAIKFLPETANNHLENFKELPKQKWKTEVEFIKWIEPVNVPFRMFIDAFGKTHINDIKYKLPTVKFAPLKTKQTKENPNRIGDWTCSHPKLDERVFTSDLMQIALYSYTTGLKPSLSYASAKERYLFTEDNCEELKQENLKLWLNELIAYEIAWEKKLKAANGSVEELLWLNIPDFSDIRKKSFWWNSIPKEYMENYLKTYV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0115011_10041575

Overview

Ecosystem & Geography

Associated Families

Sequences