Scaffold Ga0115011_10009362

Overview

Basic Information

• Taxon OID: 3300009593
• Scaffold ID: Ga0115011_10009362
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6524
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (79.17%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 15.249
  • Long. (^o): -20.515
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024796	Metagenome / Metatranscriptome	204	Y
F030771	Metagenome / Metatranscriptome	184	Y
F071290	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115011_100093622	F030771	GGAG	MQLLEVMNMNSLDLISREGEQGSEGAMIRKELRRREAIGYWKGEFAKYEIKDNEPVSTVGTVRIVR*
Ga0115011_100093624	F071290	AGGAGG	MPAKWKESEVIHARDARGRMMKTDNPVKKYKHYYLKQTPSAELIEYLNGYSSKPKKIMKARNELVRRGYTISWKPKVVV*
Ga0115011_100093629	F024796	AGG	MSLPIMEMMMGQYSDLVEKQRTLLEVEKWRKGVKQIMMVASPNKKLWTTTYNDDSQLFEKFQDDRWTSTTLGSRMTTQDCVDQMSREEQDAESRR*