Scaffold Ga0115011_10006762

Overview

Basic Information

• Taxon OID: 3300009593
• Scaffold ID: Ga0115011_10006762
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7699
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 15.249
  • Long. (^o): -20.515
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003020	Metagenome / Metatranscriptome	513	Y
F047731	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115011_100067622	F003020	N/A	MLTKGENNMPDISRFKSVSVSMDTHDKLTKMAANKFGVQVSVQKVIDFLIEKEIKKKNGRSNGKSRS*
Ga0115011_100067623	F047731	AGGAG	VTYTDKDPVEIILGVCDSCNAYVPFVRLITKDEKRIYQCMTCKSKHTQHINGKVTFNYLEDAYTIKRN*