Scaffold Ga0115011_10000367

Overview

Basic Information

• Taxon OID: 3300009593
• Scaffold ID: Ga0115011_10000367
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38747
• Total Scaffold Genes: 68
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (39.71%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 15.249
  • Long. (^o): -20.515
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001235	Metagenome / Metatranscriptome	741	Y
F001625	Metagenome / Metatranscriptome	661	Y
F011190	Metagenome / Metatranscriptome	294	Y
F021393	Metagenome / Metatranscriptome	219	N
F031648	Metagenome	182	Y
F049929	Metagenome / Metatranscriptome	146	Y
F062151	Metagenome / Metatranscriptome	131	Y
F064801	Metagenome / Metatranscriptome	128	Y
F081741	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115011_1000036710	F049929	N/A	MVIKSFEIDYNGTKETIEYETDIKYGEMESILSNSIDLSDVSKPKVNIPQYRMNILIKVLRKAPFPVGDTNAVRQLTQSQATEIMKEVMKDYPLAKYLGDWVETFTGSQINTDIDTQSTTSVQ*
Ga0115011_1000036712	F062151	AGGAGG	MRMTSTSYTSADLLESILVDNWTSDNVPNVQKAWERRSVGFIDDRRDQIILTPKAENIKYFGLYGNDHWHDVTIDLDIRTYQNDERHADIVSEVIRIIKSKIRGGTDYTDLRVIASYTRNQYMRNMFNHIITISMRISESS*
Ga0115011_1000036715	F031648	N/A	MPHKIMVEYNHNVKSFNADTTIKGNHGVIVSVYVSKTGSSGSKCVFKNGTTSSGTEEFTIFSEQQGSYVGINRRFEDGIFADITGNAEYTVVFK*
Ga0115011_1000036716	F001625	N/A	MAVTISTSDWTDANVRKTLSWQAALTSKLRVYKVTVTAGGSDAYATNGVSADLKEGRISTLVAVIPEYTDSLYKVEYDKANEKIKLFSVGGSAGAVFAEVANSTSIANKVFEFLVIGY*
Ga0115011_1000036718	F021393	N/A	MVEEINSETQVDTVEKSADTLVETEKSFQQTVKSGIDTLTEVVQSIAESQLASTQAIEGLATRVKALETPTDLPLSPKGTVAGDDVGAKVTVPDTYQSNSVQAGLDDDRSGDKKPSSDKGGLKMQQKADDTELVEKSQHTFTTETPRPNAALETVEKSHTDSSQILEDARAGGYDGLSNVAKGILTGKYYTPSPDEVGVY*
Ga0115011_1000036720	F081741	GAG	MVEPLLVVVLATVSGAILNTIRGFLHSDEGYDIKKFFGAVIVSGFAGIAISQTIGLSGIDLLGLALIGLTAGFSVDYAVSKAKKVAE*
Ga0115011_1000036724	F001235	N/A	MATKLNVDKGGEDIGKKLWKKHQDDEYTHVNNYKEAICLNCFTKDAAAATIAMICGECAGKRGREPLLAKISDKYYGLCLFCGEHKFHLEEINARFCHPCHRKIANVTKEYNKKGGAFGTDPFWKRMRKIHGKDWKIIMSGETGRKV*
Ga0115011_1000036726	F064801	N/A	MGVADTFRTVVKNLTTLNKSQTDSTTRPSMAQPYMSTDTGAKLPIFPFPLIMIYELADNIDALRIPIETLNREMFKNGFEVIEKFKFKCSNCSKEFQYKPLKNDNPDEQPFENNQDNESNQLPRSDAKKAIPNELNQTHEMECDSCGNTNMLRPKPENRKVLEDLLENPINGNDQTLEDLSRQLERDLEIADNAYCLVLKSYDINDTTGKINHEKSKIKEFLRIDPPQVAMIADSDGRIGYDDKRNKVFVCPRFEHRDKRLTTDKCDRCGAEALKAVIEVNSVYSVGIPQPKRVVYGEGEVIWKAGKYKPSLIYGFSPIYSIWSKAMALSHMDEYIRKYFDKMRPPRGMLVIASRNYETFRKSWDVLEQKATEDPYMIHPLLVESDKGGKNMAQWIDFTGSLKELEFTVIRKELRQIIGAVFGVLPLYYGELPSGWSQEGLQVTITNRAVKWGQDILYKAFLYKISKLVGVEDWELRLKGGEENDKLRDLQIQGVEIQNMAAMQAMGFEVTRTHTGEFKVSKNPLLSPEAMILGLPEEEKPNTSGSKGRGRGTAAPKEDQQTMDGQPKKQRPSDKGGVAQGHPASGSGTSQSKKMNLEPKAYPDGITSTNFETVKKTLQDSIDFDWTKKKTVEELRQKAFMTVRQARDVVKSELSDVKRWEDDEE*
Ga0115011_1000036732	F011190	GGAGG	MIRESINNFINGLRKSFSGKDYVREISQCKNCGKPSFFDYCLKCEVDEAYRGYNKKNKDNI*