Scaffold Ga0116138_1004158

Overview

Basic Information

• Taxon OID: 3300009552
• Scaffold ID: Ga0116138_1004158
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_150
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6302
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): 1.5 to 1.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F003859	Metagenome	464	Y
F004817	Metagenome	422	Y
F005112	Metagenome / Metatranscriptome	411	Y
F007120	Metagenome	357	Y
F015428	Metagenome	254	Y
F057060	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116138_10041581	F005112	N/A	MAALLALAFWKNSRSYPRESRLWRLGKAAIDTGLVVLMVIYAPALLLMYVVIWLTSPFRNRIMQVTAAFASILAITHLAGVVFESVAVLGVFAVDLLTGEVVARMDKRERNKLAKAA
Ga0116138_10041582	F007120	AGGAGG	MKTLIIVLSAACAVVAGYFGVRYFTHRDLDFTRARKYVRSLANNLLHTELTAAREAGTTPEATTEQAA*
Ga0116138_10041583	F002761	AGGAGG	MTFTPSATSSFSAGAVFWGMVWATLGKLNELVHFLGFKKSHPREILLRWINAHKVVTITLTEAVNYSVHGISSPLGVTFALGGTLVNIFMITFIVPIWCRLSNLESR*
Ga0116138_10041585	F015428	AGGAGG	LTGILELFALLEVGSGIGFLVRWRSRLLARKVNYFRPPHNRKSPFDKLVRAQTGPVTTRQDQLCLKLADGLTVLVRRLVMFDAFRQLMRALALPNSPLLRRLRGQRRLS*
Ga0116138_10041586	F003859	AGGAG	MDEQNTEKDTSLECTSIPDSSWPGASLYKSLKLGWHWRRLRWAVVAASEAAQGHEANGLPPGSREFKTLFSEVARKVQKYSTESGDPLDTLKARLPALCALERLAYPAPTVPRNKAGLTLEILIAALLGSLGMGALVGLGAGMAHWIAHLFG*
Ga0116138_10041587	F004817	AGGA	MLKTAALVQLPEILRNGSSHLVKLAGKVDSFSLLLRDTPEGELKRSIEVQFHTMVFATRKEVRKYCPRYRYLPGEGILDFSTDCASGQLDPGDLGKPPQPKRGRLCEKCCFFAGIPEEQVPEMTVSAAPRDLVPVA*
Ga0116138_10041589	F057060	N/A	LETRELNPWDLLHTVALADGKTTFEVATYNPGNRWPEAWTSGAALASPRGGAILTGHPVQVGDLIQITGAMPNGQIKGNCLIWDIEHDLVVWDVKQELRAWQGQIYLSVLNELHGGPANLDVQTASNLDLAKVRDHKLIQFLCQQYACDVFDLMRDDDRVKEEIGFYNPASWADEDGNPVINENRWKLWRMYSAGLPAMQFRNCRDAFYRTQMESPENSDPDRFRMRFREPRDLMTVKAKELAGAAVRRYLFPEPFVFDKQGYPHWDRSTLPDVESVHLGGFNGEFISLRNPNASHKESGKLRGRRLQQFAGIDRGAVMFVHLGFAASPEGTPGMAKSFNGADFDDSVLALLDPEIVKHWKTLPEYPWGVATPTEVKVIDDGDALFDRHPKVAPYDHDYVTCMLYDAKRGQTGIGYVVNAITWFNLLWLNRESILAELRAMQPSPQVAAAIRWMEQELPKSRMPMVASRLEEIIDAIKLNGSSIEWASGVIMEFRETCPVAPNFWWQGGYQGQGRIPRDRLENGNEPIPVTTAMDVAREQWIELFQKARRFADKESWKRCWRVPPEIRSFPTRPEAATAARDFWMFYNRTREAEKAEFLKAGKDHRGKKVTREQEAGIAAYLYAEEEVHNRIKASGMYLEIYAELVKLVFDRGMTLEPPRNPDGTVKPVADGILGGPHTLDGLLDIARAAGVTRCHVPLTWESDRVRADYGELNLDIVVEDTLVRMAGSAPNPASWIGIVDLPDGEYRLEHGLVVTEDTSEAPPQEPAVALVAVNGFEQRLKDEKLQQEDRQRIEAELKAFRAQVCNGVTIKPVTYRNPQSQEDEAGAEVFLEGTSEPLGWISREHLPLVTSELTGVLVSGGPYTLKVLCPLPEPGAHS*