Scaffold Ga0105238_10063259

Overview

Basic Information

• Taxon OID: 3300009551
• Scaffold ID: Ga0105238_10063259
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3700
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030915	Metagenome / Metatranscriptome	184	N
F034654	Metagenome / Metatranscriptome	174	Y
F050293	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105238_100632592	F034654	N/A	VELLVYHAGPFLATRRKPERAAMNPRAISGGLLLIVAGFAIAVAAGNSPKPVSGMRSNMPAGYAVMVLKPSKATLSLIGLIECPELEGAQRVAEGLHKKLISADGTVVRQFPQRFSFRITASLRKIFAEGPDFSVDVAGDPQELLLNLKFRIRAYNGLQAREIVPQSIEMIGVPADVPYDERVYRINIDTGNLPITDRVIVEISSPQGELLTHFPFSVL*
Ga0105238_100632595	F050293	GGAG	MKPGWRKLCLPLLMACSLAAMAQSKTPVAENNKVIEDARHAYYSLRAAGLDEFRATVKPNWELVLKDQIKTDPVGAQAGLKLLNGIHFSMLLDDAGKVTVTHHSDTEPSTEQQRKGFDDIYSGMDQAINGFFATWSVFMLNSPFPSPNSEYKLEDLGTQYRLSYKDGAADVVTLMGKNLIITDIKVTSTEFNSSVRPQFVHTPKGFVLTGYDADYKPTSGPGVVKLALKIDHHPVNGLQLLDKLVLDSVMDGTPTHMELAFSDYEVKSH*
Ga0105238_100632596	F030915	N/A	VSFVVKVGSWEQQMPEGYYVPFSAVVDAPYWLYKFGHGPKANNVAGIIPKGGLIHVQGPAGAWGGTHQSAYLMGVGRIIVKIGDFQPAPAVTTNS*