Basic Information | |
---|---|
Taxon OID | 3300009551 Open in IMG/M |
Scaffold ID | Ga0105238_10000010 Open in IMG/M |
Source Dataset Name | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 271274 |
Total Scaffold Genes | 287 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 149 (51.92%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
Associated Families | 6 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Michigan, USA | |||||||
Coordinates | Lat. (o) | 42.3948 | Long. (o) | -85.3738 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002548 | Metagenome / Metatranscriptome | 549 | Y |
F003710 | Metagenome / Metatranscriptome | 473 | Y |
F010067 | Metagenome | 309 | Y |
F013826 | Metagenome / Metatranscriptome | 268 | Y |
F022212 | Metagenome | 215 | Y |
F043999 | Metagenome / Metatranscriptome | 155 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0105238_10000010193 | F003710 | N/A | MRVMLIKGMTEQEIRVLQEFRRVAAESLGVAAIKAIKHPAGGGEGPAFSLVDKGMLTTDAARENFALTAKAKEFLSYDPKPEFEEAGSAAEEPVVVE* |
Ga0105238_10000010226 | F002548 | GAG | MGKYAMDSTMEVRSPIFERRRLRRIRMIVELTLNLVGSDMTVSHREARCLVRCARKAILELHPGFEQRYERIVLPYFERMLASRWPHEQAFDDDCCDVVN* |
Ga0105238_10000010229 | F022212 | GGAG | MRRFLVLLALAAVSCGGGSPDASDNSSEWLHVLRHKQAASAPNAPVHAKQAYADTLGAFVVKHPTHSRAREVYQHIQLDFAHELAVVGRHQDAIRIYRAILTHDPKNDAALKGLADSVDHLAVSHEKLLALEKGMSQRDVAHLLGKPIPGWQVTNDRPDSTIESWYYRRTGGGIAGVYFRDGVLFAAEENSQAKIAPLMRQ* |
Ga0105238_10000010247 | F043999 | N/A | MEKPVRRTLLPGVSDAGAPPPVVIDSRVVVARARRRAIVRDVIDLLLLVCVDGLFLRWNHAHVPFLDRHDSLLVLLALNAMLVGYVWLARALPRWTARKVAATWCLAERTRFFRS* |
Ga0105238_1000001038 | F013826 | AGGAGG | MAVCWRCPSCSEVSCEDDVNATGNPVACDHCERPFPQQETLCTVCDTPNPWSRRDTLHFLCRECGTAQTYFSHLPMAG* |
Ga0105238_1000001074 | F010067 | N/A | MTEDDQRSDEARESFAYFSNEYAQALQAFKTIEGQSSTLLLMGVSDELRGFIDQFITMASGTKALAEERDETHFAEWFGELIRKAEVLRGEIVPQ* |
⦗Top⦘ |