Scaffold Ga0115013_10101101

Overview

Basic Information

• Taxon OID: 3300009550
• Scaffold ID: Ga0115013_10101101
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1641
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -17.283
  • Long. (^o): 2.9768
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024093	Metagenome / Metatranscriptome	207	Y
F033254	Metagenome / Metatranscriptome	178	Y
F035957	Metagenome / Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115013_101011011	F033254	N/A	MRKFKHEKLWSFEDEHVIDGMIYSNDLGKWVTIEEYTDVYYGTL*
Ga0115013_101011013	F035957	N/A	MSKYFDDLTLEEMFEYHDHTYMMSDDHRAYENGRYQRDILEDKVKSQGGWTKELVDLYNKYAPEGMFQKDWKWMQEVKELNK*
Ga0115013_101011016	F024093	N/A	MAVIKQMNIVAEEIATDIIKEIKEQSDWQVGQFLPKDAESPIINDTHSYLMRLVARHIANKLDVTTNKYYDE*