NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115013_10041928

Scaffold Ga0115013_10041928


Overview

Basic Information
Taxon OID3300009550 Open in IMG/M
Scaffold IDGa0115013_10041928 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2497
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameSouth Atlantic Ocean
CoordinatesLat. (o)-17.283Long. (o)2.9768Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042905Metagenome / Metatranscriptome157N
F042906Metagenome / Metatranscriptome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0115013_100419281F042906N/AMPLIKNNLYYELTTETQTKPVSAVKIQLDVLDGCHHKCPGCFVHRRGNASDEKQIRKAEAFIESITNQGILVDEILIGPTDFLASENFYEVMPQLEYIINDNSPILAFVSTLIDGDIVRFCDWITSRINTDTEIEIGIATNPHKFYEEKYVQHIKDVLKYIDENLEHEVTYTFVVNIKDYGLDYSALHDQAVKEFDTILDFIPSVSRSHKSNIILATLDKFNEYFNVLSKDTKLNNIMVDHSHGGMNYQVLNYKKGDWYISPFMYENMAIYNDIFKIESFEDIHPIIESQQYLAKGTECEKCELYFSCYNRKIILLRDYLGEDRCIAPKENMMRNIDNYNHA
Ga0115013_100419282F042905AGAAGGMKLKLNNTYAGYYTYDPELSPINQDFLRTEINLDILHGCDQMCPGCFIPRKNFTKADDLEILYNLLVNGQYHPDEIVIGPTDIFDAQNFEEIMNHEYMFKLYEISSIGFTSTLLQPYWIIKEKLDKIWSLYRHIKRIPDIDFKIVLDVDKYLDGELDEWYKKLKLFEHGSVQFRVNYYKGIFDRISYNELCEKTFEDFNAPVVITPSFLTDRNARGKVKQHLANFREDLLNQNIDEKWRNYYTFFDAKFNGLGCQNYSFYGGKLYINPFLYDAIIQRTPFFETTMDENKLYDNIEYAQQVDDCNGCEFMMSCAERNVHMYMESRDLTSCVALKEYMHAPH*
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