NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115013_10002862

Scaffold Ga0115013_10002862


Overview

Basic Information
Taxon OID3300009550 Open in IMG/M
Scaffold IDGa0115013_10002862 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9504
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (18.18%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameSouth Atlantic Ocean
CoordinatesLat. (o)-17.283Long. (o)2.9768Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007692Metagenome / Metatranscriptome346Y
F017499Metagenome / Metatranscriptome240Y
F035780Metagenome / Metatranscriptome171Y
F096215Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0115013_100028621F007692N/ANTHIEIDGVKIELSQHAFGKLLGRLRIPKAFAKRFAEGFGNDGLKQLVTMMKTMKSSKNDQTITLLVDPRAKKVTNILPGGYASVSNENFINFAERYIDQYDLSVTDMGSDPNGGATINCVSQNGIFTVPGMSDEVFSTGVTFRNTPIRGLEVSPYLNRLVCSNGMTSTAFSETYGLHQLNDKSINEFNEHMISMAATGFQPIGLADKIKSANQTDASLAEVQKAMSAILSTDKKVDFDYAQRYLPINRAMKAYSDIGAEPSTFTTKQLQNAKSGMSVWEVVNGMTNFASNDNKYNIDDHKTGNLMVTAGNLLMKKSYDTEALLQFDPFANRQLLTETESARMMGQA*
Ga0115013_1000286212F017499N/AMSRYNSRMHGITEDNVYVDLNWGFDHVLGYWYDIIETRNGEETVIEEWSSSMGGSRSKMLEFLIKYNLPEEHRSMVGLDMQF*
Ga0115013_1000286215F096215N/AMADFNTGDKVTWTAEMVCVPHPEGKTDRNGNILPVFRDKKMTGTIINSCYDNKYTVRPDGTNTPKGMDSYYDKMVAGKKLSKI*
Ga0115013_1000286216F035780N/AMGAPEEYELTVKESKEVWWATTNEYDLEIDGENISVRIAETPKSTEFFEYEENSGWNEADTDSGLMAIVYEAWQNGELE*
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