NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115013_10001529

Scaffold Ga0115013_10001529


Overview

Basic Information
Taxon OID3300009550 Open in IMG/M
Scaffold IDGa0115013_10001529 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13314
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (86.67%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameSouth Atlantic Ocean
CoordinatesLat. (o)-17.283Long. (o)2.9768Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005591Metagenome / Metatranscriptome395Y
F010318Metagenome / Metatranscriptome305Y
F015812Metagenome / Metatranscriptome252Y
F031261Metagenome183Y
F051470Metagenome144N
F068823Metagenome124N

Sequences

Protein IDFamilyRBSSequence
Ga0115013_1000152911F005591GAGGMNLYFKSTTLDKQIGWTWKDMDKAYWDTWIPKKSDIKIITRLNKEQKQQVLDELWEDLQSSIQFTRDRNNAKRREKRLATKNKK*
Ga0115013_1000152917F015812GGAGGMNNKTLYKRLDEICAREHVVNKLSDNKYRTFVDLLYDDIRTWDEPMNVSEVDIIHRIGEHLSYMVSSSLADTCTGTNHD*
Ga0115013_1000152918F010318AGGAGGMMNVDSDKPRYIECIYETPITFDLEELGIDWDNVKDYYIKHGTLYVDFKDGTSVEHMGNHGETDWKWSAQENILTEDWTLVEGLN*
Ga0115013_1000152920F031261AGGAGGMRTKTWVMTVEKNSDEVLAQLNKLQQVRQSVSLLNKHSTKKHYVKCQGRWGRKNPDYNQRTIPFCPLDKAVKWDVYIYAR*
Ga0115013_1000152921F068823AGGAGGMSRTYNDYYFEKLDIMDKLNEIGLLTRLLRIVYKEQGLDTIKYLVCNKTKRKFNWFNDEMMTDIINDIEEGVSYEN*
Ga0115013_1000152923F051470N/AMEKIIMIADSNENKWIHDYYDERWQHYYDVLCKDIKDIGQVETIADRLAMEDVNNLEMEG
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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