Scaffold Ga0116107_1000466

Overview

Basic Information

• Taxon OID: 3300009548
• Scaffold ID: Ga0116107_1000466
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31579
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (67.65%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): 1 to 1.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038042	Metagenome	166	Y
F065350	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116107_100046617	F065350	N/A	VNLTEELLEGQSSFEQFCSQFDWHDFKILSSFLTKLDYPLDTTTQSLHSIWLLFTLRGIKVSKMTICRRLGKLAALGILKKLPKTNPAFYEIAKGQEGLVKKIVYFKNTEEFMKL*
Ga0116107_100046618	F038042	N/A	MKTGPKPIGGMLKPNILQVLEDAGADLRAWTVTLRLRQLLQTPHLRWETVHKYLEQMTVEQMIFRYEDPSGIVTYSKNPIVREKVLF*