Scaffold Ga0116136_1031710

Overview

Basic Information

• Taxon OID: 3300009547
• Scaffold ID: Ga0116136_1031710
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1606
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): .4 to .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005296	Metagenome	405	Y
F009261	Metagenome	320	Y
F085038	Metagenome	111	N
F100248	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116136_10317102	F085038	GGAGG	MKLIFGFLLFVATVAVTGGLYLIIRKEDDKKCDLQRLYSLPSQIARRVQSLGDYLFNLFGSKPEANDEHPGAEVTAAA*
Ga0116136_10317103	F100248	GGA	MTKLSILAILSLLFIGVTRIAQFVVALFVIVFFGFTTFELIRTFRQPARRQQAA*
Ga0116136_10317104	F009261	AGGAGG	MILTPSNTGNVAAGVGVGIFAWGAFLKADKIPWIQKLLTTKRKDATLKWIDKNKGISLLGLETVNFGIHGITNPNSVMFALGNTILNIFMLWVYLPFRIASAAKKHTASVLKGVA*
Ga0116136_10317105	F005296	N/A	SKRISTGVNRRNLMPIWLVWLLPSYEAGFWSALIAGKLRDRGKTRELLVYGRPARTCLPVIDERLRKAAGTPTKSQALVARWVTAGLRWLANTRAMEYAILLGLKRAWPKGQTIYTEVKLCL*