Scaffold Ga0116136_1002500

Overview

Basic Information

• Taxon OID: 3300009547
• Scaffold ID: Ga0116136_1002500
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8461
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): .4 to .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F003859	Metagenome	464	Y
F025427	Metagenome / Metatranscriptome	201	Y
F057060	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116136_100250012	F057060	AGGAGG	MPNREELYFTPQINKPHQKWSVLEDPERPGRRPIFRHYRQPGEKPDVRTSFGFSELSPVLEHYAAKAGVEYSRISLGRQTDSFGLALALVQSGLGLEIPGDGTWYPVIPWVRDDGFCAVLMREPIPYKEACHLFGFDIPAAKPSVPKRIKRHLARGRTALFGREAEVRQLNQYDSVHRVILADGVTSFETAVYDPGPRWPEAWTSGAALASRRGGALLTGHPVQIGDLIQITGALPSGQIKAHCLIWDGDYDLIVFDIKKELRAWNGQAYFSVLNELHGSPANLDVQTASNLDLAKVRDQKLIQSLSQEFACDVFELMRDDERVKEEIGFYNPDGWVDEEGNLAVDENRWKLWRMYAAGLPAMQFRHCRDAFYRTQMESPQNSDPDRFRIRFREPKDLITVKPEELAGAAVRKYLFPEPFVFDRQGYPYWERSTLPDVNSVYLGGFEGEFISLRNPNASHKESGKLRGRRLQQFADIDRGAVMFVHLGFAASPEGTPGLGKSFNGADFDDSVLALLDPEIMAHWKTLQDYPQVVVTPTQAMVIDDGDALFDRHPEVARYNDEYVIRMIVDARDGQMGIGCVVNAIVWFNLLWLNRTSILAQLRTMEPSSKVLEAIRWMELDLPKSQMPMIASRLEEIIDSIKMNGKSVEWANGVITEFRNTCPVAPKFWWQGGFQGQGRIPRHRLAIYNEPIPVTTAMDIAREEWVELFKKARKYADKESWKRCWRVPLEIRTFPTRPEAATAARDFWLLYNRTREAKKAEFLKAGKDHRDKRVTNEQEAGLAAYLFAEEDVHNRIEASGMYLEIYAELVKLVFDRELTLEPPRNPDGAVKPVADGILGGPHTLDGFLDMARAAGVTRKYVPISWESDRVRADYGHLNLDVVVEDTLVRMVGSTPNPASWLGIVDVPDGQYRLEHGLVATEDDTEAPPQVTTVALPAVNGFEQRLRDIALKQEDRQKIEAELKLFQAQVGQRVTVKPVTYHNPKTCQDEPAAEVFLEGKSEPLCWISREQVSTVTRELTGILVSNGKYSLKALCPLPEQGAQS*
Ga0116136_10025004	F002761	N/A	MVWAGLGKLNELARFVGFKRAKPRESALRWINSHKVITLTATEVVNYSVHGISSPLGVTFALGGTLVNAFMVAFIVPIWCRLSNLESH*
Ga0116136_10025005	F025427	N/A	MEELLVSLETCPIQKKGLVWRLLKLYWKRLLFIVLMLVLPGGLIVLFLCVTAWALNWEHEMTAYMDETYKKWKEEHDIHAE*
Ga0116136_10025008	F003859	GGAG	MDEQNPEKDTSLERSSSPGSSWPGASLYKSLKLGWHWRRLRWAVVAASEAAQGHEANGLPPGSREFKTLFDEVVRKVQEYSTEYGDPLDTLKARLPALCALERLAYPAPTVPRNKAGLTLGILIAALLGSIGMGALIGLGTGMAHWIAHLFA*