Scaffold Ga0105237

Basic Information
Taxon OID	3300009545 Open in IMG/M
Scaffold ID	Ga0105237_10000679 Open in IMG/M
Source Dataset Name	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009545 Open in IMG/M

Scaffold ID

Ga0105237_10000679 Open in IMG/M

Source Dataset Name

Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	47055
Total Scaffold Genes	49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	39 (79.59%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

47055

Total Scaffold Genes

49 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

39 (79.59%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Ecosystem

Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	Michigan, USA
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Michigan, USA

Coordinates

Lat. (^o)

42.3948

Long. (^o)

-85.3738

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F026424	Metagenome / Metatranscriptome	198	N
F035981	Metagenome / Metatranscriptome	171	N
F078336	Metagenome	116	Y
F084521	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105237_1000067921	F084521	GGAG	MIGEQIYSVEVAIVRCPGDGEDGGPLGVPVEKPTTVRYCDVCRRWGAVGSTHMCWRNWRVRLSDLLMNLTRDGRR*
Ga0105237_1000067929	F026424	AGGA	MMNLSLEKMKKFSSEIHALKTKHEKAIQKTNDVIEQGVDATLASATAFGLGIWQTRSDHQKLLGVPIDLAVGLAAHAAGFMGMGGKAAPYLHSVANGALAAHFHTVGRGVGKEMREKAGLAPVAMSGEGPAEGGSNLSDDALLEMARRRG*
Ga0105237_1000067930	F035981	AGAAGG	MRYDESSGDEILGADEILGADEILGADEVLAGGGEESAGDESSGEESAGDESSGDELVGLRLFRRKKRKGTRKVASPIVQSRLAQQGVIVKTQGYSKGRSQSLGFEFLAVQPGGTVDVPANPQVLFKPKRLVYTGPVNTFVIQDVKIGRSSQFVASGPQSADAYPPTSTVDNMELDTARPGVVITLRIQNVSGVAADFRATMFGQVAE*
Ga0105237_1000067937	F078336	GGAGG	MKSFYESGMSEVGGRLFSVLSPSAIKQEIDSVDLYIRRIDGDVQAHKAKVADLLRDWHLFVEEWTTFRDGAGWFARTTGATYDKALDFRKRADAWDELVHRRGASTAPVGTTPAPAPQGDLVGSLVKLAGIGLAAYVGVSLIQLYKQREARHDDRPGT*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0105237_10000679

Overview

Ecosystem & Geography

Associated Families

Sequences