Scaffold Ga0105237_10000004

Overview

Basic Information

• Taxon OID: 3300009545
• Scaffold ID: Ga0105237_10000004
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 447763
• Total Scaffold Genes: 773
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 407 (52.65%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031713	Metagenome	182	Y
F036462	Metagenome / Metatranscriptome	170	Y
F038776	Metagenome / Metatranscriptome	165	Y
F040370	Metagenome	162	Y
F042051	Metagenome / Metatranscriptome	159	Y
F042607	Metagenome	158	Y
F065185	Metagenome	128	Y
F069394	Metagenome	124	Y
F085609	Metagenome	111	Y
F094469	Metagenome	106	Y
F096147	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105237_10000004479	F031713	AGAAG	MYEKLYEKYLIGDFMSSKNVIIDLKSRKDKDGATFYVGKVEAPVLIDCSKGVVFLVFVSDKGEEQLQIAPMDEKNSGD*
Ga0105237_10000004519	F096147	N/A	MSDVDILKSQFVVKYHEMGPYKFYRFLMVYALNKLILIEKDDYKGILPNLEFIEYHDKFIILYRREGEDVYLELAKLFRKIAHKIYRVMLKKKMTPPSTKFLTLV*
Ga0105237_10000004531	F042607	GAG	MIKIINNKRVDMTADESAMYDKIVKSYTTLTNKGEDLFIDLFETDDHGIITYLRPPSKRQTSMEVFLFLMSLMQHQYLRLFQSQVQDICDQMKVKMAEIDEKLKDK*
Ga0105237_10000004532	F036462	AGGA	MSNSVRLGDLLGNQLEEDFTEFDLTEIQQVLSKLQIEEAIDLVHAEMLQQQSLRGADILTEYLGKIVKTVGYLETKVNSTKNRVSLEYSAPDGSRTTADMKKWAGESSTEVEAVQIKLAKAKGSKVVLEKKYDILIRAHHHYKDIAAGLRRTILGYNLKPEKTAEGWE*
Ga0105237_10000004536	F042051	GGAG	MTTTFGEVNWSDEVYSGGNKKDSNKDLWLKLDEGDNEVRLVTQPFQFLIHKYKKDPNDKKDFGQKVYCSAVHGSCPLCALGDKAKPRWLLGVISRKTNTYKILDISFAVFSNVRKLAKNPKWGDPTKYDINIVVDKNGGATGYYSVQPLSKEPLSAADQVIKDNVDLDELKRKVTPPTAEMVQKRIDKINGGTSAAPVAAQPAKVASVDMSDDETLDTAFPSYDANA*
Ga0105237_10000004544	F038776	GGAG	MTKFAVDYTGVENKIYKKAYRLADVKDQLETVAFDIVRFKDQDKGAELWQVQSADDGDYIVAIYDNDAEEMKSEAAWDVFVSKTAGDLQISYKGEPLVKVAASKLGIPAKELHKVSSYLPTKLAENKKLVNALLNQLSPSAKKEVLLKYPELV*
Ga0105237_10000004548	F094469	N/A	MNKTALKKIIEHPDKDEFISKLVMGFSPKDVHDWLAAKYTNVSESKFVISENSIKSFQSNYLDIYNIIQEDLTKTRVAINNSAEDQLEFAVNNSQAYKDLMVKTANEELDIRQTVKRLCVAIETRLGQVFDEIQEDPRNINTKIDRIFLEYAEVLGNILEKYYKFTEAPADQIVQHNVTLQVVDQHISVFHDVIKDVLSQMDLETSLYFMEVFNDKMAKLKPPSQQAVIPSEARLAEAKLLSENINKKLSE*
Ga0105237_10000004562	F069394	AGGTGG	MINRKAYIVNMTYEVSDAEKLQASRALVHFNHVLKLLHLSTDHLNIMKTPFKDNPGMSADDVMKARAALRRFRDKAIENFNDFKQAAFKCVNAMQDFSFDTQTIKLIKSLIASIDDLEKNVNKFSDLFNDLESKDFASNIVKEIEKIQSDGDAIEEIIEERIKRHIQNNILATSWVDSVGDEIQMKIEKKTPLLLDLYNKRQDQLNEKVKETTIQGE*
Ga0105237_10000004609	F040370	N/A	MSANNFFKSDLYKIYNIIQASMLVYPKEAIIATLRDFFSKDSYYHYSKDQWGFANTTDHTDLPPGADLPYGIGSHPELNNGPEGILSTRLFIGENYRYDGIFYPAILVKTGGSRYVPISINRDQGAVQYEDAIFEDGYGNQTIVSRPKTFITAGAWEGSIVIDIITRSLRSRDDLVELVAMCFTEIHFDSLYDVGVLVKPLSIGSPTESDDRNDKLFRQSITLDIRTEWRREIPVGNLIDAILFSVEFAYLDNPNYPAAANLTINTEVNVAEAFDD*
Ga0105237_10000004654	F085609	AGTAGG	MLDEVIAEAIRIEVDEDTGRMFIVFEVKSEKHKRDIRKNWADDIEYRLVGKNLVLDER*
Ga0105237_10000004670	F065185	AGG	MKIEFEDKSYIECKKSSDGKIIIIISAKDHNNALKKITNAVEISIDDFKRLIEDV*