NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0105237_10000004

Scaffold Ga0105237_10000004


Overview

Basic Information
Taxon OID3300009545 Open in IMG/M
Scaffold IDGa0105237_10000004 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)447763
Total Scaffold Genes773 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)407 (52.65%)
Novel Protein Genes11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Associated Families11

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameMichigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031713Metagenome182Y
F036462Metagenome / Metatranscriptome170Y
F038776Metagenome / Metatranscriptome165Y
F040370Metagenome162Y
F042051Metagenome / Metatranscriptome159Y
F042607Metagenome158Y
F065185Metagenome128Y
F069394Metagenome124Y
F085609Metagenome111Y
F094469Metagenome106Y
F096147Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0105237_10000004479F031713AGAAGMYEKLYEKYLIGDFMSSKNVIIDLKSRKDKDGATFYVGKVEAPVLIDCSKGVVFLVFVSDKGEEQLQIAPMDEKNSGD*
Ga0105237_10000004519F096147N/AMSDVDILKSQFVVKYHEMGPYKFYRFLMVYALNKLILIEKDDYKGILPNLEFIEYHDKFIILYRREGEDVYLELAKLFRKIAHKIYRVMLKKKMTPPSTKFLTLV*
Ga0105237_10000004531F042607GAGMIKIINNKRVDMTADESAMYDKIVKSYTTLTNKGEDLFIDLFETDDHGIITYLRPPSKRQTSMEVFLFLMSLMQHQYLRLFQSQVQDICDQMKVKMAEIDEKLKDK*
Ga0105237_10000004532F036462AGGAMSNSVRLGDLLGNQLEEDFTEFDLTEIQQVLSKLQIEEAIDLVHAEMLQQQSLRGADILTEYLGKIVKTVGYLETKVNSTKNRVSLEYSAPDGSRTTADMKKWAGESSTEVEAVQIKLAKAKGSKVVLEKKYDILIRAHHHYKDIAAGLRRTILGYNLKPEKTAEGWE*
Ga0105237_10000004536F042051GGAGMTTTFGEVNWSDEVYSGGNKKDSNKDLWLKLDEGDNEVRLVTQPFQFLIHKYKKDPNDKKDFGQKVYCSAVHGSCPLCALGDKAKPRWLLGVISRKTNTYKILDISFAVFSNVRKLAKNPKWGDPTKYDINIVVDKNGGATGYYSVQPLSKEPLSAADQVIKDNVDLDELKRKVTPPTAEMVQKRIDKINGGTSAAPVAAQPAKVASVDMSDDETLDTAFPSYDANA*
Ga0105237_10000004544F038776GGAGMTKFAVDYTGVENKIYKKAYRLADVKDQLETVAFDIVRFKDQDKGAELWQVQSADDGDYIVAIYDNDAEEMKSEAAWDVFVSKTAGDLQISYKGEPLVKVAASKLGIPAKELHKVSSYLPTKLAENKKLVNALLNQLSPSAKKEVLLKYPELV*
Ga0105237_10000004548F094469N/AMNKTALKKIIEHPDKDEFISKLVMGFSPKDVHDWLAAKYTNVSESKFVISENSIKSFQSNYLDIYNIIQEDLTKTRVAINNSAEDQLEFAVNNSQAYKDLMVKTANEELDIRQTVKRLCVAIETRLGQVFDEIQEDPRNINTKIDRIFLEYAEVLGNILEKYYKFTEAPADQIVQHNVTLQVVDQHISVFHDVIKDVLSQMDLETSLYFMEVFNDKMAKLKPPSQQAVIPSEARLAEAKLLSENINKKLSE*
Ga0105237_10000004562F069394AGGTGGMINRKAYIVNMTYEVSDAEKLQASRALVHFNHVLKLLHLSTDHLNIMKTPFKDNPGMSADDVMKARAALRRFRDKAIENFNDFKQAAFKCVNAMQDFSFDTQTIKLIKSLIASIDDLEKNVNKFSDLFNDLESKDFASNIVKEIEKIQSDGDAIEEIIEERIKRHIQNNILATSWVDSVGDEIQMKIEKKTPLLLDLYNKRQDQLNEKVKETTIQGE*
Ga0105237_10000004609F040370N/AMSANNFFKSDLYKIYNIIQASMLVYPKEAIIATLRDFFSKDSYYHYSKDQWGFANTTDHTDLPPGADLPYGIGSHPELNNGPEGILSTRLFIGENYRYDGIFYPAILVKTGGSRYVPISINRDQGAVQYEDAIFEDGYGNQTIVSRPKTFITAGAWEGSIVIDIITRSLRSRDDLVELVAMCFTEIHFDSLYDVGVLVKPLSIGSPTESDDRNDKLFRQSITLDIRTEWRREIPVGNLIDAILFSVEFAYLDNPNYPAAANLTINTEVNVAEAFDD*
Ga0105237_10000004654F085609AGTAGGMLDEVIAEAIRIEVDEDTGRMFIVFEVKSEKHKRDIRKNWADDIEYRLVGKNLVLDER*
Ga0105237_10000004670F065185AGGMKIEFEDKSYIECKKSSDGKIIIIISAKDHNNALKKITNAVEISIDDFKRLIEDV*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.