Scaffold Ga0115099_10871820

Overview

Basic Information

• Taxon OID: 3300009543
• Scaffold ID: Ga0115099_10871820
• Source Dataset Name: Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_20Mar14_M2_3um Metatranscriptome (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1046
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 36.6882
  • Long. (^o): -122.386
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001478	Metagenome / Metatranscriptome	687	Y
F043966	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115099_108718201	F043966	N/A	AKGPQTKGINKNFGFHVNRPFYIVSELPFNRVAECHGANNVWLKRWRNNVKAQQWYFDGVSKTIKNNYWKSHSLDIQSNGGSSNIRCTTTNSRWW*
Ga0115099_108718202	F001478	N/A	MVVNERGKVVAVQGGLDNENRNIVVENKNGKVHQRWRITYVDEYEKEPTKGQLNKKFGLYVERDFYVVSALPDNRYLDLINNRNMVIKTKNGRRTQVWYFHQQSLTIRTRYNNQSWDIKNAGKTNDMQIWSTNSGWFQVFKYENNQFINW*