NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115004_10077590

Scaffold Ga0115004_10077590


Overview

Basic Information
Taxon OID3300009526 Open in IMG/M
Scaffold IDGa0115004_10077590 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2067
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)79.2466Long. (o)-150.0613Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041865Metagenome159N
F045138Metagenome153N

Sequences

Protein IDFamilyRBSSequence
Ga0115004_100775902F041865GGAMKRNEDSYAKVAKNEIYNYRSKLGLSQVNMAKKMGLSHRMWNHYEHGTKQVPISVVLSAKYLCQNIDKMEKLHDDIKEHKDYLTDFDVNRINRLVEASKSYVPKDIDPLIKKIMAQFEREMGFLLSKMN*
Ga0115004_100775904F045138N/AVAKQATVNWTCSIHIHVSRRPIIIDPTEFHDMSVAHSERHNTPLPSNDRASYFGNAIPLEIAKDIGYRVSKNIDQYNSFLAPSRIDDGGYAVPAMRRVYNNRGQKNGYFCKKPSSKDAILNSTSLYQLQRSISPASKYSSINLYHWSDYETIEYRSHGGTFEIEKIWSYAMFLIAMQKHSIINRHNQVQQLINTPEYIGRSANTRQSLAYSVMRRQGGATVQEIMNASGIQTAQRVRSMISEQIRPNLLRQFNRDVLITHNQQYYNHAYNTSQGRYDLNGYEIPLQVNNGSGGAVFASNGGTDLLLGLDNNYKHNLKPFRNYNFEDLI*
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