Scaffold Ga0116222_1080130

Overview

Basic Information

• Taxon OID: 3300009521
• Scaffold ID: Ga0116222_1080130
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1409
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019188	Metagenome	231	Y
F033311	Metagenome	177	Y
F047848	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116222_10801301	F019188	N/A	YRAPNGDPLEPRILIDNKDKAAIAETDLDKLVRDAKERSIPVAALVAREESQLRNGDRESRWSRKDGVWLLRTTRQWIVRDLDLLKPIFERMRVEGFDLLERNAMLAEELRRTFPEIDRIEKELGKASKAIQSVSALVVRHRERLRELCDSSASRGLAIAPERDGSMPSASQYQLEGNGR
Ga0116222_10801303	F047848	AGGAGG	MDYVHVFVLRTLCFDEHGEIKSRNVAVTFDMFEAEDHRNKGVENGYDTFVVPGNWREEQ*
Ga0116222_10801304	F033311	GAG	MRELAKAFLAQGKKVRAAALMLNLIKTEPTPENLELLADIYMRQGLFDDAAVLYLRVVKMGLNE